Lectures 11 & 12- Enzymes

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(Lectures 11 & 12- Enzymes ) Biology- Semester 1 Fichas sobre Lectures 11 & 12- Enzymes , creado por emma_moran el 03/01/2014.
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What are enzymes? They are biological catalysts
What is the role of the enzyme papain? It is found in papaya plants and will break any peptide bond- it is used to tenderise meat
What is the role of the enzyme trypsin? It is a digestive enzyme that only splits bonds between lysine and arginine residues
What is the role of the enzyme thrombin? Catalyses the hydrolysis of Arg-Gly only in a specific chain of residues
What often happens to the energy of the reactants in enzyme controlled reactions? It is is converted into other forms e.g I mitochondria the free energy of small molecules is converted into the energy in an ion gradient
What is the active site of an enzyme? The region that binds substrates and contains that directly participate in the making and breaking of bonds
What are the residues of the active site called and what do they do? They are called the catalytic group and they promote the formation of the transition state.
How do substrates bind to the active site? By multiple weak interactions including hydrogen bonds, Van der Waal's and electrostatic interactions.
How is it that only specific substrates bind to an active site? The binding depends on the precisely defined arrangement of atoms in an active site. The R groups in an active site create regions that only appropriate chemical groups can bind to.
What is the lock and key model? The active site and enzyme possess complementary shapes that fit together perfectly
What is the induced fit model? The active site and substrate have similar shapes and the active site moulds around the substrate when they bind.
What are co-factors? Simple inorganic metal ions that promote enzyme function
What are co-enzymes? Small organic molecules that attach to activate the enzyme and detach when the reaction is complete to deactivate the enzyme.
What are apoenzymes? An enzyme without its cofactor
What are haloenzymes? Enzymes with their cofactors
What are isoenzymes? Enzymes that differ in amino acid sequence but catalyse the same chemical reaction.
What different properties do isoenzymes usually display? Different kinetic parameters (different KM values) or regulatory properties
What are the symptoms of Hurler syndrome? Abnormal bone structure and developmental delay.
What causes Hurler syndrome? Build up of glycosaminoglycans due to a deficiency of iduronidase- an enzyme responsible for the degradation of mucopolysaccharides in lysosomes.
What is the treatment for Hurler syndrome? Enzyme replacement therapy and bone marrow replacement
What are the symptoms of Neimann-pick disease? Cell death and the malfunction of major organ systems
What causes Neimann-pick disease? Lack of aid sphingomyelinase (ASM)-an enzyme found in lysosomes that is required to metabolise a lipid call sphingomyelin. If ASM is absent, sphingomyelin can't be metabolised and accumulates in cells
What symptoms occur in Tay Sachs disease? Progressive deterioration of nerve cells and of mental and physical abilities that commences at around six months of age and results in death at around age four.
What causes Tay Sachs disease? Harmful quantities of cell membrane components known as gangliosides accumulate in the brains nerve cells, leading to premature death of cells
What are the symptoms of Homosystinuria? Near sightedness, increased risk of blood clotting, brittle bones. Less common forms: Intellectual disability, failure to grow and gain weight, seizures and problems with movement.
What causes homosystinuria? Inherited disorder which effects the enzyme Methylenetetrahydrofolate reductase (MTHFR) which converts homosysteine to methionine
How do enzymes effect the energy of enzyme controlled reactions? They lower the energy required to initiate the conversion of the reactants into the products
Do enzymes alter the free energy difference between the products and reactants? No the energy change remains the same
What is the activation energy? The energy required to start a reaction
How do enzymes accelerate a reaction? They increase the rate of reaction and not the reaction equilibrium
How do enzymes increase the rate of reaction? They enable the formation of the transition state which has a higher energy level
What are oxidoreductases? Enzymes that catalyse oxidation or reduction reactions, where electrons are transferred from one molecule to another
What are transferases? Enzymes that catalyse the movement of a functional group from one molecule to another
What are lyases? Enzymes that catalyse reaction that generate a double bond. This is a type of elimination reaction.
What are synthases? They add a substrate to a double bond (opposite of lyases)
What are isomerases? Enzymes that catalyse structural changes within a molecule. There is only one substrate and no product with nothing gained or lost, so they only represent a change in shape.
What are Ligases? They are the catalyst of ligation; the joining of two substrates. Usually chemical energy is required so its is coupled with the hydrolysis of ATP.
What are hydrolases? Enzymes that catalyse hydrolysis; breaking of bonds through the addition of water
What are helicases? Enzymes that separate DNA strands
What are kinases? Enzymes that transfer phosphate groups from molecules such as ATP to substrates
What factors effect the rate of enzymes controlled reactions? Concentration of enzyme, concentration of substrate, temperature, pH, inhibitors
If you are increasing the concentration of the substrate what is the saturation point The point where all active sites are occupied
If you are increasing enzyme concentration what is the saturation point? There is no more substrate
What is the optimum enzyme temperature in the human body? 37
What is Vmax? The maximum velocity achieved by a system at saturating substrate concentrations
What is Km? The substrate concentration at which the reaction velocity is 50% of the Vmax
What does Km measure? The affinity of an enzyme for its substrate
What does the value of Km represent? The lower the value of Km the more tightly the substrate is bound.
What is Km often used to distinguish between? Isoenzymes
What values of Vmax and Km would an efficient enzyme have? High Vmax and low Km
Name two process in which the role of Km is important Control of blood glucose level and the metabolism of alcohol (READ HOW BOTH OF THESE MECHANISMS WORK)
What is alcohol converted to by the body? Acetaldehyde
What enzyme converts alcohol to acetaldehyde and vice versa? Alcohol dehydrogenase
What are the two types of reversible inhibition? Competitive and non-competitive
How do competitive inhibitors work? They have a simuilar shape to the substrate which means they can also bind to the active site preventing the formation of enzyme substrate complexes.
What does the competitive inhibitor Disulfiram (Antabuse) inhibit? Aldehyde oxidase- which causes the accumulation of acetaldehyde with subsequent side effects of nausea and vomiting
What are the symptoms of methanol poisoning and how are they caused? Methanol is oxidised to formaldehyde and formic acid which attack the optic nerves and cause blindness.
How is methanol poisoning treated? Ethanol is given as an antidote which competitively hibitits the oxidation of methanol and the oxidation of methanol is slowed down and the toxic by-products don't have a chance to accumulate.
How do non competitive inhibitors work? The bind to an allosteric site on the enzyme and this causes the active site to change shape so the substrate can no longer fit.
What is Nifedipine used to treat? Angina and high blood pressure
How does Nifedipine work? It is a calcium channel blocker, it inhibits Ca2+ dependent ATPase which prevents the uptake of calcium into cardiac cells.
How do irreversible inhibitors work? They bind so tightly to the active site that they can't be removed
What do MAOIs do? They are chemicals that inhibit the activity of the monoamine oxidase family.
What are MAOIs often used to treat? Depression
What happens if MAOIs are ingested orally? They inhibit the catabolism of dietary amines
How does uncompetitive inhibition work? The inhibitor increase the enzyme's affinity for the substrate (Km is lowered) which means its takes longer for the product to leave the active site (Vmax decrease)
How do end product inhibitors work? The enzyme makes something to switch another on off
What are zymogen? An inactive precursor of the enzyme. A zymogen is typically a longer polypeptide that must be hydrolysed at a specific location for the active form of the enzyme to be produced.
What is proteolysis? Fusion of a protein with a lysosome
How are enzymes used as cardiac biomarkers? Elevations of cardiac enzyme levels should be interpreted in the context of clinical and ECG findings
What is troponin? Contractile protein that normally is not found in serum. It is only released when myocardial necrosis occurs
How does ELISA work? Antigens from the sample are attached to a surface. Then, a further specific antibody is applied over the surface so it can bind to the antigen. This antibody is linked to an enzyme, and, in the final step, a substance containing the enzyme's substrate is added. The subsequent reaction produces a detectable signal, most commonly a color change in the substrate.
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