Regulatory Modifications

Descrição

Structural Basis for Biological Function (Protein Modifications) Quiz sobre Regulatory Modifications, criado por gina_evans0312 em 22-12-2013.
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Quiz por gina_evans0312, atualizado more than 1 year ago
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Criado por gina_evans0312 mais de 10 anos atrás
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Resumo de Recurso

Questão 1

Questão
Regulatory modifications can be removed
Responda
  • True
  • False

Questão 2

Questão
What is added in Palmitoylation?
Responda
  • Palmitic Acid
  • Palmitoyl-5-Phosphate
  • Palmitite

Questão 3

Questão
The substrate in palmitoylation is added through a thio-ester bond
Responda
  • True
  • False

Questão 4

Questão
Where is the substrate in palmitoylation added?
Responda
  • The central cystine
  • The two flanking leucines
  • Of C/LCL/C

Questão 5

Questão
Describe Model 1 of regulatory modification
Responda
  • The modification changes the functional state (Active --> Inactive or vice versa)
  • The modification changes the affinity of the protein for its binding partner

Questão 6

Questão
In Model 2, what does the addition do?
Responda
  • Activates/deactivates the protein
  • Creates a new binding site that only exists with the modification
  • Marks the protein for destruction

Questão 7

Questão
Phosphorylation is the least used modification in eukaryotic cells
Responda
  • True
  • False

Questão 8

Questão
What is the donor for phosphorylation?
Responda
  • Gamma phosphate of ATP
  • Alpha phosphate of ATP
  • Beta phosphate of ATP

Questão 9

Questão
Name the two enzymes that add/remove the phosphate
Responda
  • Protein kinases
  • Protein phosphatases
  • Protein isomerases
  • Protein transferases

Questão 10

Questão
Phosphates are added to amino acids with OH groups on the R chain
Responda
  • True
  • False

Questão 11

Questão
Phosphorylation can be used for both Model 1 & 2
Responda
  • True
  • False

Questão 12

Questão
Give an example of a Model 1 phosphorylation
Responda
  • Phosphorylation of Erk Kinase
  • Phosphorylation of tyrosine kinase
  • Phosporylation of Ras

Questão 13

Questão
Describe a Model 2 pathway for phosphorylation
Responda
  • Platelet derived growth factor self phosphorylates on Tyr
  • Allows binding of other proteins SH2 domains
  • Phosphorylation of Raf
  • Phosphorylation of MEK

Questão 14

Questão
Acetylation is used almost exclusively for model 1
Responda
  • True
  • False

Questão 15

Questão
To which residue is the substrate for Acetylation added?
Responda
  • Lysine
  • Leucine
  • Tyrosine

Questão 16

Questão
Acetylysine is neutral
Responda
  • True
  • False

Questão 17

Questão
Acetyl-lysines are recognised by what?
Responda
  • Bromo-domains
  • Phosphoserine domains
  • KH4 domains

Questão 18

Questão
The donor for Acetylation is?
Responda
  • N-acetyl glucosamine
  • N-acetyl galactosamine
  • Acetyl CoA

Questão 19

Questão
Name the proteins that add/remove the substrate in acetylation
Responda
  • Acetyl Transferase
  • Deacetylases
  • Acetyl Isomerase
  • Acetylase

Questão 20

Questão
How is acetylation used for DNA density regulation?
Responda
  • The histone monomers (H3 & H4 especially) have tails rich in lysine for acetylation
  • T/A residues are acetylated, which signals to move them to the histone and be silenced
  • GTG repeats are acetylated to activate them, moving them away from the histone

Questão 21

Questão
Acetylation causes the DNA to relax
Responda
  • True
  • False

Questão 22

Questão
What is the role of bromodomains?
Responda
  • To interact with histones
  • To interact with nucleosoems
  • Bring in other proteins for the chromatin remodelling complex

Questão 23

Questão
What is the donor substrate for methylation?
Responda
  • S-adenosyl Methionine
  • Ethanol
  • N-acetyl methionine

Questão 24

Questão
Name the two protein sets that add/remove methyl groups
Responda
  • Methyl transferase
  • Demethylase
  • Methyl isomerase
  • Methylases

Questão 25

Questão
There are separate enzymes for lysine and arginine methylation
Responda
  • True
  • False

Questão 26

Questão
Methyl can be added to the same lysine how many times?
Responda
  • 3
  • 4
  • 5

Questão 27

Questão
MeK, Me2K and Me3K are all created and recognised by the same enzyme
Responda
  • True
  • False

Questão 28

Questão
Some enzymes can mono/bi/ and tri methylate, some can only do one
Responda
  • True
  • False

Questão 29

Questão
Name the forms of dimethylated arginine
Responda
  • Me2R
  • Symmetrical Me2R
  • Asymmetrical Me2R

Questão 30

Questão
What's the difference between s & aMe2R
Responda
  • One is in Cis, the other is in trans formation
  • aMe2R has both methylations on the same arginine
  • aMe2R has both methylations on different arginines

Questão 31

Questão
Arginine has 5 nitrogens to be replaced
Responda
  • True
  • False

Questão 32

Questão
Tudor domains recognise methylation
Responda
  • True
  • False

Questão 33

Questão
Why is S-adenosyl methionine used as the donor
Responda
  • It has a 5-bonded carbon, which makes the methyl easy to remove
  • It has a 4-bonded phosphate, which makes the methyl easy to remove
  • It has a 3-bonded sulphur, which makes the methyl easy to remove

Questão 34

Questão
Tandem tudor cannot bind to Me3K as there is no longer a H for it to bind with
Responda
  • True
  • False

Questão 35

Questão
A type of tudor domain will recognise asymmetical Me2R
Responda
  • True
  • False

Questão 36

Questão
ADP ribosylation is mostly Model 2
Responda
  • True
  • False

Questão 37

Questão
What is the donor for ADP ribosylation?
Responda
  • NAD+
  • FAD+
  • NADH

Questão 38

Questão
How is the ADP gained from the substrate?
Responda
  • Cut off the nicotinamide and you're left with the ADP
  • Cut off the flavin and you're left with the ADP

Questão 39

Questão
Name the proteins that add/removed ADP
Responda
  • Poly-ADP Ribose Polymerase
  • ADP Transferase
  • De-ADPase
  • Poly-ADP Ribose Glycohydrolases

Questão 40

Questão
Which amino acids are the ADP(s) added to?
Responda
  • Lysine
  • Glutamine
  • Valine
  • Glutaminc Acid

Questão 41

Questão
Which amino acid has the ADP(s) added?
Responda
  • Lysine
  • Glutamine
  • Valine

Questão 42

Questão
ADP ribose can be addded to ADP ribose in straight or branched chains
Responda
  • True
  • False

Questão 43

Questão
What is the role of glutamic acid ADP ribosylation?
Responda
  • Happens to linker histones
  • Happens to open stretches of DNA
  • Recognised by DNA damage response proteins
  • Recognised by silencing proteins

Questão 44

Questão
Name the 3 enzymes used in the addition of Ubiquitin
Responda
  • E1- Ubiquitin Conjugating Enzyme
  • E1- Ubiquitin Activating Enzyme
  • E2- Ubiquitin Conjugating Enzyme
  • U2- Ubiquitin Ligase
  • U3- Ubiquitin Activating Enzyme
  • U3- Ubiquitin Ligase

Questão 45

Questão
De-Ubiquitinating Enzyme removes Ubiquitin
Responda
  • True
  • False

Questão 46

Questão
What type of bond forms between Ubiquitin and the target residue?
Responda
  • Thio-ester, between the COOH of the ubiquitin and the lysine on the target protein
  • Isopeptide, between the COOH of the ubiquitin and the lysine on the target protein
  • Disulphide, between the COOH of the ubiquitin and the lysine on the target protein

Questão 47

Questão
Ubiquitinated lysine 63 are open and flexible and acts a signalling site for complex formation Ubiquitinated lysine 48 are compact and mark the protein for destruction
Responda
  • True
  • False

Questão 48

Questão
What is the first step of ubiquitination?
Responda
  • Ubiquitin is activated by ATP hydrolysis
  • Ubiquitin is activated by GTP hydrolysis
  • Ubiquitin is activated by UTP hydrolysis

Questão 49

Questão
Once Ub has been activated, what enzyme does it bind to, and what bond forms?
Responda
  • Thio-ester
  • Peptide
  • E1
  • E2

Questão 50

Questão
The Ub is then passed on to..
Responda
  • E1
  • E2
  • E3

Questão 51

Questão
What is the role of E3?
Responda
  • Binding of an E2-Ub complex
  • Binding on an E1-Ub complex
  • Binds to substrate protein & transfers ubiquitin to amino group of lysine

Questão 52

Questão
Protein specificity for Ubiquitination lives in E2
Responda
  • True
  • False

Questão 53

Questão
How many versions of E1 are there?
Responda
  • 1
  • 2
  • 3

Questão 54

Questão
There are 35 versions of E2
Responda
  • True
  • False

Questão 55

Questão
How many E3's are there?
Responda
  • 1
  • 10's
  • 100's

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