Questão 1
Questão
Regulatory modifications can be removed
Questão 2
Questão
What is added in Palmitoylation?
Responda
-
Palmitic Acid
-
Palmitoyl-5-Phosphate
-
Palmitite
Questão 3
Questão
The substrate in palmitoylation is added through a thio-ester bond
Questão 4
Questão
Where is the substrate in palmitoylation added?
Questão 5
Questão
Describe Model 1 of regulatory modification
Questão 6
Questão
In Model 2, what does the addition do?
Responda
-
Activates/deactivates the protein
-
Creates a new binding site that only exists with the modification
-
Marks the protein for destruction
Questão 7
Questão
Phosphorylation is the least used modification in eukaryotic cells
Questão 8
Questão
What is the donor for phosphorylation?
Responda
-
Gamma phosphate of ATP
-
Alpha phosphate of ATP
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Beta phosphate of ATP
Questão 9
Questão
Name the two enzymes that add/remove the phosphate
Responda
-
Protein kinases
-
Protein phosphatases
-
Protein isomerases
-
Protein transferases
Questão 10
Questão
Phosphates are added to amino acids with OH groups on the R chain
Questão 11
Questão
Phosphorylation can be used for both Model 1 & 2
Questão 12
Questão
Give an example of a Model 1 phosphorylation
Questão 13
Questão
Describe a Model 2 pathway for phosphorylation
Questão 14
Questão
Acetylation is used almost exclusively for model 1
Questão 15
Questão
To which residue is the substrate for Acetylation added?
Questão 16
Questão
Acetylysine is neutral
Questão 17
Questão
Acetyl-lysines are recognised by what?
Responda
-
Bromo-domains
-
Phosphoserine domains
-
KH4 domains
Questão 18
Questão
The donor for Acetylation is?
Responda
-
N-acetyl glucosamine
-
N-acetyl galactosamine
-
Acetyl CoA
Questão 19
Questão
Name the proteins that add/remove the substrate in acetylation
Responda
-
Acetyl Transferase
-
Deacetylases
-
Acetyl Isomerase
-
Acetylase
Questão 20
Questão
How is acetylation used for DNA density regulation?
Responda
-
The histone monomers (H3 & H4 especially) have tails rich in lysine for acetylation
-
T/A residues are acetylated, which signals to move them to the histone and be silenced
-
GTG repeats are acetylated to activate them, moving them away from the histone
Questão 21
Questão
Acetylation causes the DNA to relax
Questão 22
Questão
What is the role of bromodomains?
Responda
-
To interact with histones
-
To interact with nucleosoems
-
Bring in other proteins for the chromatin remodelling complex
Questão 23
Questão
What is the donor substrate for methylation?
Responda
-
S-adenosyl Methionine
-
Ethanol
-
N-acetyl methionine
Questão 24
Questão
Name the two protein sets that add/remove methyl groups
Responda
-
Methyl transferase
-
Demethylase
-
Methyl isomerase
-
Methylases
Questão 25
Questão
There are separate enzymes for lysine and arginine methylation
Questão 26
Questão
Methyl can be added to the same lysine how many times?
Questão 27
Questão
MeK, Me2K and Me3K are all created and recognised by the same enzyme
Questão 28
Questão
Some enzymes can mono/bi/ and tri methylate, some can only do one
Questão 29
Questão
Name the forms of dimethylated arginine
Responda
-
Me2R
-
Symmetrical Me2R
-
Asymmetrical Me2R
Questão 30
Questão
What's the difference between s & aMe2R
Responda
-
One is in Cis, the other is in trans formation
-
aMe2R has both methylations on the same arginine
-
aMe2R has both methylations on different arginines
Questão 31
Questão
Arginine has 5 nitrogens to be replaced
Questão 32
Questão
Tudor domains recognise methylation
Questão 33
Questão
Why is S-adenosyl methionine used as the donor
Responda
-
It has a 5-bonded carbon, which makes the methyl easy to remove
-
It has a 4-bonded phosphate, which makes the methyl easy to remove
-
It has a 3-bonded sulphur, which makes the methyl easy to remove
Questão 34
Questão
Tandem tudor cannot bind to Me3K as there is no longer a H for it to bind with
Questão 35
Questão
A type of tudor domain will recognise asymmetical Me2R
Questão 36
Questão
ADP ribosylation is mostly Model 2
Questão 37
Questão
What is the donor for ADP ribosylation?
Questão 38
Questão
How is the ADP gained from the substrate?
Questão 39
Questão
Name the proteins that add/removed ADP
Questão 40
Questão
Which amino acids are the ADP(s) added to?
Responda
-
Lysine
-
Glutamine
-
Valine
-
Glutaminc Acid
Questão 41
Questão
Which amino acid has the ADP(s) added?
Questão 42
Questão
ADP ribose can be addded to ADP ribose in straight or branched chains
Questão 43
Questão
What is the role of glutamic acid ADP ribosylation?
Responda
-
Happens to linker histones
-
Happens to open stretches of DNA
-
Recognised by DNA damage response proteins
-
Recognised by silencing proteins
Questão 44
Questão
Name the 3 enzymes used in the addition of Ubiquitin
Responda
-
E1- Ubiquitin Conjugating Enzyme
-
E1- Ubiquitin Activating Enzyme
-
E2- Ubiquitin Conjugating Enzyme
-
U2- Ubiquitin Ligase
-
U3- Ubiquitin Activating Enzyme
-
U3- Ubiquitin Ligase
Questão 45
Questão
De-Ubiquitinating Enzyme removes Ubiquitin
Questão 46
Questão
What type of bond forms between Ubiquitin and the target residue?
Responda
-
Thio-ester, between the COOH of the ubiquitin and the lysine on the target protein
-
Isopeptide, between the COOH of the ubiquitin and the lysine on the target protein
-
Disulphide, between the COOH of the ubiquitin and the lysine on the target protein
Questão 47
Questão
Ubiquitinated lysine 63 are open and flexible and acts a signalling site for complex formation
Ubiquitinated lysine 48 are compact and mark the protein for destruction
Questão 48
Questão
What is the first step of ubiquitination?
Responda
-
Ubiquitin is activated by ATP hydrolysis
-
Ubiquitin is activated by GTP hydrolysis
-
Ubiquitin is activated by UTP hydrolysis
Questão 49
Questão
Once Ub has been activated, what enzyme does it bind to, and what bond forms?
Questão 50
Questão
The Ub is then passed on to..
Questão 51
Questão
What is the role of E3?
Responda
-
Binding of an E2-Ub complex
-
Binding on an E1-Ub complex
-
Binds to substrate protein & transfers ubiquitin to amino group of lysine
Questão 52
Questão
Protein specificity for Ubiquitination lives in E2
Questão 53
Questão
How many versions of E1 are there?
Questão 54
Questão
There are 35 versions of E2
Questão 55
Questão
How many E3's are there?