Lectures 11 & 12 - Enzymes I & II

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Katie Flaherty
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Katie Flaherty
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Frage Antworten
Initial Velocity definition? The velocity of the reaction at the beginning of your experiment
KM definition? the substrate conc. at which the initial velocity is half max velocity
Vmax definition? the maximum velocity or rate at which the enzyme catalysed a reaction. (when all enzyme active sites are saturated with substrate)
How to work out Initial Velocity, KM and Vmax?
Enzyme-substrate complex equation?
Assumptions of that equation^?
Michaelis-Menton equation?
6 classes of enzyme? Oxidoreductases Transferases Hydrolases Lyases Isomerases Ligases
Oxidoreductase, type of reaction and example? -adds O2 or removes 2H -lactate dehydrogenase (converts pyruvate to L-lactate)
Transferase, type of reaction and example? -transfer of functional groups -alanine amino transferase (involved in glutamate to alanine equilibrium to take up alanine in the diet)
Hydrolase, type of reaction and example? -Hydrolytic reaction -Trypsin, cleaves amino acid bonds by the addition of water (its active site it comp to peptide bonds)
Lyases, type of reaction and example? -add groups to C=C bonds -ATP-citrate lyase (involved in reaction in the krebs cycle)
Isomerase, type of reaction and example? -isomerisation reactions -phosphoglucose isomerase (involved in glycolysis step)
Ligase, type of reaction and example? -form C-C or C-N bonds with ATP cleavage -DNA ligase (use ATP to catalyse the formation of new covalent bonds)
Cofactor and which cofactors are needed for cytochrome oxidase? -a substance whose presence is essential for the activity of an enzyme (often inorganic) -Cu2+ and Fe2+/3+
Coenzymes? organic molecules that are required by certain enzymes to carry out catalysis
Isoenzymes? - enzymes with different protein structures which catalyse the same reaction -They are coded for by different genes - Different isoenzymes are often found in different cellular compartments or different amounts in different tissues - They have distinct biochemical roles
Rearrangement of the Michaelis-Menton equation... produces a straight line equation forming the Lineweaver-Burke plot
Four categories of enzymes? Competetive- reversible competitive-irreversible non-competitive-reversible non-competitive-irreversible
Reversible inhibition definition? inhibition of enzyme activity in which the inhibiting molecular entity can associate and dissociate from the protein's binding site.
Irreversible inhibition definition? Irreversible inhibitors usually react with the enzyme and change it chemically (e.g. via covalent bond formation).
Effect of competitive inhibitors on enzyme activity?
Effect of non-competitive inhibitor on enzyme activity?
2 clinical uses of enzymes inhibitors? 1. Control of angiotensin production for treatment of heart failure - enzymes cleave the bonds or add more AA's at the sites to change the protein 2. Hydrolysis of ACh to increase levels and decrease effects of Alzheimer's
3 Metabolic regulations of enzyme activity? 1. Allosteric binding sites (+ or - effectors) 2. Covalent modification by other enzymes -phosphorylation (kinases) or dephosphorylation (phosphatases) 3. Induction/repression of enzyme synthesis
Homotropic and Heterotropic Allosteric Enzymes? Homotropic - is a substrate for its target enzyme, as well as a regulatory molecule of the enzymes activity Heterotropic - is a regulatory molecule that is not the enzymes substrate – it may either be an activator or an inhibitor for the enzyme. E.g. H+ & CO2 are heterotropic allosteric modulators of haemoglobin
Example of Negative allosteric effectors? ATP and citrate on Phosphofructokinase
Example of Positive allosteric effectors? Phosphoenolpyruvate (PEP) and fructose 1,6 bisphosphate on pyruvate kinase
Effect of Allosteric enzymes on Conc./Velocity graph? Km is not applicable to non-MichaelasM enzymes so K0.5 is used instead
Covalent Modification effect on Glycogen synthesis or degradation? -involves addition or removal or phosphate from Ser, Thr, Tyr or His residues - Phosphorylation of glycogen phosphorylase increases its activity so glycogen degrades - Phosphorylation of glycogen synthase decreases its activity and causes synthesis of glycogen -phosphorylation by protein kinase and dephos. by protein phosphatase
Adenylylation? now known as AMPylation, is a process in which adenosine monophosphate (AMP) molecule is covalently attached to a protein side chain, altering the function of the protein.
2 ways to regulate the amount of enzyme? -high glucose levels leads to increase in insulin production which increases the rate of synthesis of key enzymes for gluc. metabolism -some enzymes are synthesised as larger inactive precursor forms called proenzymes or zymogens. Activation involves the irreversible hydrolysis of one or more peptide bonds- activating it.
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